If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 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'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 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=> 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 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'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' 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'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 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'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' 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'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 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'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' 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'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 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'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' 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'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 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'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' 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'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 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'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' 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'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 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'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' 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'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 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'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' 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'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 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'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' 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'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 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'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' 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'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 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'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' 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'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 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'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' 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'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 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'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' 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'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 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'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' 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'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 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'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ), 'gf_id' => 'HOM05D000656', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000656' ), 'data_identifier' => 'HOM05D000656', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000656', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p01050' => 'bna', 'A03p11110' => 'bna', 'A03p44420' => 'bna', 'A06p47440' => 'bna', 'A09p20920' => 'bna', 'A10p02400' => 'bna', 'Aa31LG1G12500' => 'aar', 'Aa31LG1G21910' => 'aar', 'Aa31LG5G3110' => 'aar', 'Actinidia03740' => 'ach', 'Actinidia07127' => 'ach', 'Actinidia10782' => 'ach', 'Actinidia10990' => 'ach', 'Actinidia19684' => 'ach', 'Actinidia19686' => 'ach', 'Actinidia19687' => 'ach', 'Actinidia40032' => 'ach', 'Actinidia40033' => 'ach', 'Actinidia40034' => 'ach', 'Ah.01g015520' => 'amhyb', 'Ah.15g092240' => 'amhyb', 'AL1G13450' => 'aly', 'AL3G42370' => 'aly', 'AL3G53540' => 'aly', 'AL6G12450' => 'aly', 'AL8G15890' => 'aly', 'AL8G37080' => 'aly', 'Aqoxy1G02300' => 'aox', 'Aqoxy1G02835' => 'aox', 'Aqoxy4G03251' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BY0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0V7YUS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B6G8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QT14C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4QQ8RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.72R8EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8FP09Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A40EG2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A4NC5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD1WMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2IUDG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FSAY7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZJ8DG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5YHMD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6N0JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLK9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V3297W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNDJ9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9C0XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WXHT' => 'arhy', 'AT1G03870' => 'ath', 'AT2G04780' => 'ath', 'AT2G20520' => 'ath', 'AT5G03170' => 'ath', 'AT5G44130' => 'ath', 'AT5G60490' => 'ath', 'ATR0179G001' => 'atr', 'ATR0661G277' => 'atr', 'ATR0661G374' => 'atr', 'ATR0681G250' => 'atr', 'Atru.chr3.3665' => 'acertr', 'Atru.chr3.3666' => 'acertr', 'Atru.chr6.2857' => 'acertr', 'Atru.chr6.2858' => 'acertr', 'Atru.chr6.2917' => 'acertr', 'Atru.chr6.2918' => 'acertr', 'Atru.chr6.2919' => 'acertr', 'Atru.chr6.3326' => 'acertr', 'Atru.chr8.1880' => 'acertr', 'AUR62017551' => 'cqu', 'AUR62036074' => 'cqu', 'AUR62040052' => 'cqu', 'AUR62043148' => 'cqu', 'AUR62043429' => 'cqu', 'BcaB01g04660' => 'bca', 'BcaB01g05853' => 'bca', 'BcaB05g21848' => 'bca', 'BcaB07g30969' => 'bca', 'BcaB08g34486' => 'bca', 'BcaC01g03190' => 'bca', 'BcaC01g03191' => 'bca', 'BcaC03g13023' => 'bca', 'BcaC04g21862' => 'bca', 'BcaC04g21863' => 'bca', 'BcaC05g24493' => 'bca', 'BcaC05g24494' => 'bca', 'BcaC06g31651' => 'bca', 'BcaC06g34589' => 'bca', 'BolC2t06082H' => 'bol', 'BolC2t07248H' => 'bol', 'BolC3t12694H' => 'bol', 'BolC3t13746H' => 'bol', 'BolC3t17780H' => 'bol', 'BolC5t29000H' => 'bol', 'BolC7t43211H' => 'bol', 'BolC9t55544H' => 'bol', 'BraA02t04746Z' => 'bra', 'BraA03t09487Z' => 'bra', 'BraA03t10425Z' => 'bra', 'BraA03t13575Z' => 'bra', 'BraA06t27614Z' => 'bra', 'BraA09t37692Z' => 'bra', 'BraA10t42509Z' => 'bra', 'C02p00850' => 'bna', 'C03p01360' => 'bna', 'C03p12800' => 'bna', 'C03p12810' => 'bna', 'C03p55050' => 'bna', 'C05p02220' => 'bna', 'C07p26810' => 'bna', 'C09p26420' => 'bna', 'CAN.G1001.25' => 'can', 'CAN.G1012.6' => 'can', 'CAN.G1097.1' => 'can', 'CAN.G1169.4' => 'can', 'CAN.G1169.5' => 'can', 'CAN.G1169.6' => 'can', 'CAN.G1169.7' => 'can', 'CAN.G1543.1' => 'can', 'CAN.G294.13' => 'can', 'CAN.G631.12' => 'can', 'CAN.G888.13' => 'can', 'CAN.G888.14' => 'can', 'CAN.G897.5' => 'can', 'CANSAT54G0003' => 'cansat', 'CANSAT54G0058' => 'cansat', 'CANSAT54G0370' => 'cansat', 'CANSAT54G0824' => 'cansat', 'CANSAT54G1404' => 'cansat', 'CANSAT54G1681' => 'cansat', 'CANSAT54G1724' => 'cansat', 'CANSAT54G1750' => 'cansat', 'CANSAT54G1942' => 'cansat', 'CANSAT54G2077' => 'cansat', 'CANSAT54G2550' => 'cansat', 'CANSAT54G2599' => 'cansat', 'CANSAT54G2991' => 'cansat', 'CANSAT54G3058' => 'cansat', 'CANSAT64G0266' => 'cansat', 'CANSAT64G0397' => 'cansat', 'CANSAT80G2508' => 'cansat', 'CARHR003200' => 'chi', 'CARHR102750' => 'chi', 'CARHR111070' => 'chi', 'CARHR179140' => 'chi', 'CARHR210180' => 'chi', 'CARHR274160' => 'chi', 'Carub.0001s0301' => 'cru', 'Carub.0003s2637' => 'cru', 'Carub.0003s3498' => 'cru', 'Carub.0006s0196' => 'cru', 'Carub.0008s0439' => 'cru', 'Carub.0008s2118' => 'cru', 'Ca_00475_v3' => 'car', 'Ca_01422_v3' => 'car', 'Ca_01423_v3' => 'car', 'Ca_01424_v3' => 'car', 'Ca_01478_v3' => 'car', 'Ca_05242_v3' => 'car', 'Ca_05243_v3' => 'car', 'Ca_05244_v3' => 'car', 'Ca_05245_v3' => 'car', 'Ca_05247_v3' => 'car', 'Ca_06475_v3' => 'car', 'Ca_08839_v3' => 'car', 'Ca_17890_v3' => 'car', 'Ca_17891_v3' => 'car', 'Cc01_g11300' => 'ccan', 'Cc05_g02420' => 'ccan', 'Cc05_g07830' => 'ccan', 'Cc06_g03830' => 'ccan', 'CDE03G0415' => 'cde', 'CDE04G2348' => 'cde', 'CDE04G3266' => 'cde', 'CDE04G3565' => 'cde', 'CDE07G0236' => 'cde', 'CDE10G1092' => 'cde', 'CDE10G1119' => 'cde', 'Cfa009921' => 'cfa', 'Cfa009922' => 'cfa', 'Cfa009923' => 'cfa', 'Cfa009924' => 'cfa', 'Cfa011338' => 'cfa', 'Cfa011339' => 'cfa', 'Cfa011340' => 'cfa', 'Cfa011341' => 'cfa', 'Cfa011342' => 'cfa', 'Cfa011343' => 'cfa', 'Cfa011344' => 'cfa', 'Cfa011345' => 'cfa', 'Cfa011346' => 'cfa', 'Cfa011347' => 'cfa', 'Cfa011348' => 'cfa', 'Cfa014278' => 'cfa', 'Cfa014671' => 'cfa', 'Cfa017535' => 'cfa', 'Cfa017536' => 'cfa', 'Ciclev10012588m.g' => 'ccl', 'Ciclev10016312m.g' => 'ccl', 'Ciclev10016407m.g' => 'ccl', 'Ciclev10028988m.g' => 'ccl', 'Ciclev10029172m.g' => 'ccl', 'Ciclev10030205m.g' => 'ccl', 'CiPaw.03G182800' => 'cil', 'CiPaw.03G276100' => 'cil', 'CiPaw.04G194100' => 'cil', 'CiPaw.09G177400' => 'cil', 'CiPaw.09G177500' => 'cil', 'CiPaw.13G109400' => 'cil', 'CiPaw.13G109500' => 'cil', 'CiPaw.13G109600' => 'cil', 'CiPaw.13G109700' => 'cil', 'CiPaw.13G109800' => 'cil', 'CiPaw.13G109900' => 'cil', 'CiPaw.13G110000' => 'cil', 'CiPaw.13G110100' => 'cil', 'CiPaw.13G110200' => 'cil', 'CiPaw.13G110300' => 'cil', 'CiPaw.13G110400' => 'cil', 'CiPaw.13G110500' => 'cil', 'CiPaw.13G110600' => 'cil', 'CiPaw.14G078700' => 'cil', 'CiPaw.14G078800' => 'cil', 'CiPaw.14G078900' => 'cil', 'CiPaw.14G079000' => 'cil', 'ClCG00G003790' => 'cla', 'ClCG02G002290' => 'cla', 'ClCG02G002500' => 'cla', 'ClCG02G009530' => 'cla', 'ClCG03G002250' => 'cla', 'ClCG04G008940' => 'cla', 'COL.COLO4_04972' => 'col', 'COL.COLO4_24917' => 'col', 'COL.COLO4_27041' => 'col', 'COL.COLO4_35983' => 'col', 'Cpa.g.sc165.4' => 'cpa', 'Cpa.g.sc216.24' => 'cpa', 'Cpa.g.sc45.61' => 'cpa', 'Cpa.g.sc987.3' => 'cpa', 'CsaV3_1G012930' => 'csa', 'CsaV3_2G034240' => 'csa', 'CsaV3_6G039450' => 'csa', 'CsaV3_7G002880' => 'csa', 'CsaV3_7G003150' => 'csa', 'CSS0010010' => 'camsi', 'CSS0013754' => 'camsi', 'CSS0018168' => 'camsi', 'CSS0018891' => 'camsi', 'CSS0023868' => 'camsi', 'CSS0024104' => 'camsi', 'CSS0026592' => 'camsi', 'CSS0028388' => 'camsi', 'CSS0029952' => 'camsi', 'CSS0030689' => 'camsi', 'CSS0032326' => 'camsi', 'CSS0036705' => 'camsi', 'CSS0041644' => 'camsi', 'CSS0041987' => 'camsi', 'CSS0043581' => 'camsi', 'CSS0044994' => 'camsi', 'DCAR_013047' => 'dca', 'DCAR_018821' => 'dca', 'DCAR_019719' => 'dca', 'DCAR_021117' => 'dca', 'Dinv05852' => 'din', 'Dinv12818' => 'din', 'Dinv32763' => 'din', 'Dinv35746' => 'din', 'Dinv35747' => 'din', 'Dinv35748' => 'din', 'Dinv37276' => 'din', 'Dinv39834' => 'din', 'Dinv41894' => 'din', 'Duzib012G0001' => 'dzi', 'Duzib093G1473' => 'dzi', 'Duzib132G0560' => 'dzi', 'Duzib133G0215' => 'dzi', 'Duzib133G0467' => 'dzi', 'Duzib138G1190' => 'dzi', 'Duzib150G1439' => 'dzi', 'Duzib168G2353' => 'dzi', 'Duzib170G0898' => 'dzi', 'Duzib211G0166' => 'dzi', 'ECA233G6146' => 'eca', 'ECA234G0127' => 'eca', 'ECA238G2660' => 'eca', 'ECA240G0064' => 'eca', 'ECA240G0789' => 'eca', 'ECA246G1909' => 'eca', 'ECA248G3887' => 'eca', 'EL10Ac3g05656' => 'bvu', 'EL10Ac7g16536' => 'bvu', 'EL10Ac9g20833' => 'bvu', 'Eucgr.A01074' => 'egr', 'Eucgr.A01158' => 'egr', 'Eucgr.A01871' => 'egr', 'Eucgr.B02486' => 'egr', 'Eucgr.J00938' => 'egr', 'Eucgr.K00711' => 'egr', 'FAN02G1099' => 'fan', 'FAN02G1212' => 'fan', 'FAN05G2981' => 'fan', 'FAN05G5376' => 'fan', 'FAN09G2454' => 'fan', 'FAN11G4001' => 'fan', 'FAN14G4268' => 'fan', 'FAN16G2789' => 'fan', 'FAN19G0244' => 'fan', 'FAN21G1736' => 'fan', 'FAN23G0336' => 'fan', 'FAN26G0464' => 'fan', 'FAN28G2024' => 'fan', 'FvH4_1g03420' => 'fve', 'FvH4_3g32680' => 'fve', 'FvH4_6g15700' => 'fve', 'FvH4_6g41530' => 'fve', 'Glyma.02G307700' => 'gma', 'Glyma.03G179900' => 'gma', 'Glyma.03G180000' => 'gma', 'Glyma.05G161900' => 'gma', 'Glyma.05G162000' => 'gma', 'Glyma.08G119400' => 'gma', 'Glyma.08G119500' => 'gma', 'Glyma.08G119600' => 'gma', 'Glyma.10G060950' => 'gma', 'Glyma.10G245800' => 'gma', 'Glyma.10G245850' => 'gma', 'Glyma.11G147800' => 'gma', 'Glyma.11G148100' => 'gma', 'Glyma.11G148200' => 'gma', 'Glyma.11G148300' => 'gma', 'Glyma.11G148400' => 'gma', 'Glyma.11G148500' => 'gma', 'Glyma.11G148501' => 'gma', 'Glyma.11G148700' => 'gma', 'Glyma.11G155886' => 'gma', 'Glyma.11G156304' => 'gma', 'Glyma.11G156513' => 'gma', 'Glyma.12G068900' => 'gma', 'Glyma.12G069400' => 'gma', 'Glyma.12G069500' => 'gma', 'Glyma.12G069601' => 'gma', 'Glyma.12G069700' => 'gma', 'Glyma.12G069800' => 'gma', 'Glyma.12G069900' => 'gma', 'Glyma.12G070000' => 'gma', 'Glyma.12G070200' => 'gma', 'Glyma.12G173800' => 'gma', 'Glyma.12G207600' => 'gma', 'Glyma.13G226000' => 'gma', 'Glyma.13G226100' => 'gma', 'Glyma.13G293500' => 'gma', 'Glyma.13G327100' => 'gma', 'Glyma.13G327300' => 'gma', 'Glyma.14G005300' => 'gma', 'Glyma.15G086000' => 'gma', 'Glyma.15G086100' => 'gma', 'Glyma.19G180700' => 'gma', 'Gohir.A07G086500' => 'ghi', 'Gohir.A07G117300' => 'ghi', 'Gohir.A07G175700' => 'ghi', 'Gohir.A07G189300' => 'ghi', 'Gohir.A08G049700' => 'ghi', 'Gohir.A09G106800' => 'ghi', 'Gohir.A11G324500' => 'ghi', 'Gohir.A12G139600' => 'ghi', 'Gohir.A13G221200' => 'ghi', 'Gohir.D07G091400' => 'ghi', 'Gohir.D07G121700' => 'ghi', 'Gohir.D07G173900' => 'ghi', 'Gohir.D07G195560' => 'ghi', 'Gohir.D08G059800' => 'ghi', 'Gohir.D09G103500' => 'ghi', 'Gohir.D11G343800' => 'ghi', 'Gohir.D12G144100' => 'ghi', 'Gohir.D13G225200' => 'ghi', 'Gorai.001G097900' => 'gra', 'Gorai.001G131200' => 'gra', 'Gorai.001G194400' => 'gra', 'Gorai.001G219000' => 'gra', 'Gorai.004G061700' => 'gra', 'Gorai.006G119900' => 'gra', 'Gorai.007G374100' => 'gra', 'Gorai.008G155400' => 'gra', 'Gorai.013G256000' => 'gra', 'GSVIVG01020616001' => 'vvi', 'GSVIVG01025167001' => 'vvi', 'GSVIVG01025660001' => 'vvi', 'GSVIVG01025662001' => 'vvi', 'GSVIVG01025663001' => 'vvi', 'GSVIVG01025665001' => 'vvi', 'GSVIVG01025669001' => 'vvi', 'GSVIVG01025671001' => 'vvi', 'HanXRQChr02g0038501' => 'han', 'HanXRQChr02g0055681' => 'han', 'HanXRQChr10g0291171' => 'han', 'HanXRQChr12g0373921' => 'han', 'HanXRQChr13g0403801' => 'han', 'HanXRQChr14g0452971' => 'han', 'HanXRQChr14g0452981' => 'han', 'HanXRQChr17g0554881' => 'han', 'Haze_12723' => 'cav', 'Haze_13264' => 'cav', 'Haze_20613' => 'cav', 'Haze_23281' => 'cav', 'Haze_23282' => 'cav', 'Haze_23876' => 'cav', 'Haze_23877' => 'cav', 'Haze_23878' => 'cav', 'Haze_23879' => 'cav', 'Haze_23880' => 'cav', 'Haze_23881' => 'cav', 'Haze_23882' => 'cav', 'Haze_23883' => 'cav', 'Haze_23884' => 'cav', 'Hma1.2p1_0002F.1_g002360' => 'hma', 'Hma1.2p1_0133F.1_g061010' => 'hma', 'HPP92_003613' => 'vpl', 'HPP92_009983' => 'vpl', 'HPP92_017973' => 'vpl', 'HPP92_018108' => 'vpl', 'HPP92_026722' => 'vpl', 'Lalb_Chr01g0018921' => 'lal', 'Lalb_Chr03g0027221' => 'lal', 'Lalb_Chr03g0027231' => 'lal', 'Lalb_Chr03g0027251' => 'lal', 'Lalb_Chr04g0247161' => 'lal', 'Lalb_Chr07g0186231' => 'lal', 'Lalb_Chr07g0186241' => 'lal', 'Lalb_Chr13g0295341' => 'lal', 'Lalb_Chr13g0295351' => 'lal', 'Lalb_Chr14g0367231' => 'lal', 'Lalb_Chr17g0349251' => 'lal', 'Lalb_Chr20g0112791' => 'lal', 'Lalb_Chr24g0394521' => 'lal', 'Lalb_Chr24g0394551' => 'lal', 'Lalb_Chr24g0400001' => 'lal', 'Lj1C709T2' => 'lonja', 'Lj1C709T3' => 'lonja', 'Lj1g0028082' => 'lja', 'Lj1P787T32' => 'lonja', 'Lj2A1030T59' => 'lonja', 'Lj2P111T32' => 'lonja', 'Lj3g0003821' => 'lja', 'Lj3g0005476' => 'lja', 'Lj3g0011005' => 'lja', 'Lj3g0012029' => 'lja', 'Lj3g0018839' => 'lja', 'Lj3g0021116' => 'lja', 'Lj3g0022175' => 'lja', 'Lj3g0023498' => 'lja', 'Lj3g0025685' => 'lja', 'Lj4g0003016' => 'lja', 'Lj6g0005829' => 'lja', 'Lj8P132T44' => 'lonja', 'LjContig00081g0023258' => 'lja', 'LjContig00312_ERROPOS870357g0025668' => 'lja', 'Lsat_1_v5_gn_1_65560' => 'lsa', 'Lsat_1_v5_gn_2_98261' => 'lsa', 'Lsat_1_v5_gn_5_124680' => 'lsa', 'Lsat_1_v5_gn_6_46781' => 'lsa', 'Lsat_1_v5_gn_8_137141' => 'lsa', 'Manes.03G068114' => 'mes', 'Manes.03G068416' => 'mes', 'Manes.03G074600' => 'mes', 'Manes.04G022900' => 'mes', 'Manes.04G023000' => 'mes', 'Manes.04G023100' => 'mes', 'Manes.04G023200' => 'mes', 'Manes.04G023300' => 'mes', 'Manes.04G023400' => 'mes', 'Manes.04G023600' => 'mes', 'Manes.08G005900' => 'mes', 'Manes.11G143000' => 'mes', 'Manes.11G143100' => 'mes', 'Manes.11G143200' => 'mes', 'Manes.11G143300' => 'mes', 'Manes.11G143500' => 'mes', 'Manes.11G143600' => 'mes', 'Manes.11G143700' => 'mes', 'Manes.12G060500' => 'mes', 'Manes.13G063928' => 'mes', 'Manes.13G141200' => 'mes', 'MBI14_g02329_MAGBIO' => 'mbi', 'MBI14_g20091_MAGBIO' => 'mbi', 'MBI14_g37143_MAGBIO' => 'mbi', 'MBI14_g41282_MAGBIO' => 'mbi', 'MBI14_g47776_MAGBIO' => 'mbi', 'MBI16_g31715_MAGBIO' => 'mbi', 'MBI19_g06145_MAGBIO' => 'mbi', 'MD03G1114600' => 'mdo', 'MD03G1114700' => 'mdo', 'MD04G1100000' => 'mdo', 'MD09G1119100' => 'mdo', 'MD11G1133200' => 'mdo', 'MD15G1174300' => 'mdo', 'MD17G1110000' => 'mdo', 'Medtr2g017950' => 'mtr', 'Medtr2g017960' => 'mtr', 'Medtr2g017970' => 'mtr', 'Medtr2g090765' => 'mtr', 'Medtr2g093970' => 'mtr', 'Medtr2g093980' => 'mtr', 'Medtr2g093990' => 'mtr', 'Medtr4g053380' => 'mtr', 'Medtr4g059720' => 'mtr', 'Medtr4g059780' => 'mtr', 'Medtr4g059790' => 'mtr', 'Medtr4g059840' => 'mtr', 'Medtr5g098060' => 'mtr', 'Medtr7g101080' => 'mtr', 'Medtr8g087450' => 'mtr', 'Medtr8g087460' => 'mtr', 'Medtr8g087470' => 'mtr', 'MELO3C005051.2' => 'cme', 'MELO3C014248.2' => 'cme', 'MELO3C018862.2' => 'cme', 'MELO3C018888.2' => 'cme', 'MELO3C019361.2' => 'cme', 'Migut.B01067' => 'egut', 'Migut.B01910' => 'egut', 'Migut.D02203' => 'egut', 'Migut.H01295' => 'egut', 'Migut.L01678' => 'egut', 'Migut.M00149' => 'egut', 'Migut.M00150' => 'egut', 'MSTRG.12230' => 'ama', 'MSTRG.18653' => 'ama', 'MSTRG.19152' => 'ama', 'Nitab4.5_0000101g0040' => 'nta', 'Nitab4.5_0000106g0090' => 'nta', 'Nitab4.5_0000196g0110' => 'nta', 'Nitab4.5_0000650g0080' => 'nta', 'Nitab4.5_0001229g0090' => 'nta', 'Nitab4.5_0001297g0110' => 'nta', 'Nitab4.5_0002629g0030' => 'nta', 'Nitab4.5_0004215g0040' => 'nta', 'Nitab4.5_0004358g0060' => 'nta', 'Nitab4.5_0005150g0070' => 'nta', 'Nitab4.5_0005518g0010' => 'nta', 'Nitab4.5_0006973g0030' => 'nta', 'Nitab4.5_0008167g0080' => 'nta', 'Nitab4.5_0010225g0020' => 'nta', 'Nn1g03310' => 'nnu', 'Nn1g04263' => 'nnu', 'Nn1g06396' => 'nnu', 'Nn1g07389' => 'nnu', 'Nn2g10751' => 'nnu', 'Nn2g13068' => 'nnu', 'Oeu001263.1' => 'oeu', 'Oeu014959.1' => 'oeu', 'Oeu014960.1' => 'oeu', 'Oeu014961.1' => 'oeu', 'Oeu014963.1' => 'oeu', 'Oeu014964.1' => 'oeu', 'Oeu016002.1' => 'oeu', 'Oeu025529.1' => 'oeu', 'Oeu029949.1' => 'oeu', 'Oeu059046.1' => 'oeu', 'Oeu059097.1' => 'oeu', 'Oeu059977.1' => 'oeu', 'Oeu064849.1' => 'oeu', 'Os01g0159200' => 'osa', 'Os01g0668100' => 'osa', 'Os02g0308400' => 'osa', 'Os04g0472200' => 'osa', 'Os05g0163300' => 'osa', 'Os05g0563550' => 'osa', 'Os05g0563600' => 'osa', 'Os08g0502400' => 'osa', 'Os09g0482780' => 'osa', 'Peaxi162Scf00182g00014' => 'pax', 'Peaxi162Scf00182g00119' => 'pax', 'Peaxi162Scf00189g00005' => 'pax', 'Peaxi162Scf00270g01119' => 'pax', 'Peaxi162Scf02035g00031' => 'pax', 'PGR004G0012' => 'pgr', 'PGR004G0327' => 'pgr', 'PGR042G1375' => 'pgr', 'PGR042G2726' => 'pgr', 'PGR102G2600' => 'pgr', 'PGR119G0253' => 'pgr', 'PGR119G0385' => 'pgr', 'PGR119G1823' => 'pgr', 'PGR119G2126' => 'pgr', 'PGR142G1112' => 'pgr', 'PGSC0003DMG400001754' => 'stu', 'PGSC0003DMG400003371' => 'stu', 'PGSC0003DMG400006160' => 'stu', 'PGSC0003DMG400008063' => 'stu', 'PGSC0003DMG400009400' => 'stu', 'PGSC0003DMG400010459' => 'stu', 'PGSC0003DMG400028821' => 'stu', 'PGSC0003DMG400041435' => 'stu', 'Phvul.001G176400' => 'pvu', 'Phvul.002G241600' => 'pvu', 'Phvul.002G241700' => 'pvu', 'Phvul.005G099500' => 'pvu', 'Phvul.005G135944' => 'pvu', 'Phvul.005G135955' => 'pvu', 'Phvul.006G172100' => 'pvu', 'Phvul.006G172200' => 'pvu', 'Phvul.008G287700' => 'pvu', 'Phvul.011G074200' => 'pvu', 'Phvul.011G074250' => 'pvu', 'Phvul.011G074400' => 'pvu', 'Phvul.011G074500' => 'pvu', 'Phvul.011G074600' => 'pvu', 'Phvul.011G074700' => 'pvu', 'Phvul.011G075050' => 'pvu', 'Phvul.011G075500' => 'pvu', 'Phvul.011G076000' => 'pvu', 'Phvul.011G076900' => 'pvu', 'Phvul.011G077000' => 'pvu', 'Phvul.011G077100' => 'pvu', 'Phvul.011G077200' => 'pvu', 'Phvul.011G077400' => 'pvu', 'Phvul.011G077700' => 'pvu', 'Phvul.L001754' => 'pvu', 'Phvul.L001840' => 'pvu', 'Phvul.L001954' => 'pvu', 'Potri.001G320800' => 'ptr', 'Potri.002G223300' => 'ptr', 'Potri.004G210600' => 'ptr', 'Potri.006G129200' => 'ptr', 'Potri.009G012100' => 'ptr', 'Potri.009G012200' => 'ptr', 'Potri.012G014966' => 'ptr', 'Potri.012G015032' => 'ptr', 'Potri.012G127900' => 'ptr', 'Potri.013G014200' => 'ptr', 'Potri.013G120600' => 'ptr', 'Potri.013G151300' => 'ptr', 'Potri.013G151366' => 'ptr', 'Potri.013G151432' => 'ptr', 'Potri.013G151500' => 'ptr', 'Potri.014G162900' => 'ptr', 'Potri.015G013300' => 'ptr', 'Potri.015G129400' => 'ptr', 'Potri.016G088700' => 'ptr', 'Potri.019G093300' => 'ptr', 'Potri.019G120800' => 'ptr', 'Potri.019G120900' => 'ptr', 'Potri.019G121100' => 'ptr', 'Potri.019G121200' => 'ptr', 'Potri.019G123200' => 'ptr', 'Prupe.3G205100' => 'ppe', 'Prupe.6G098900' => 'ppe', 'Prupe.6G099000' => 'ppe', 'Prupe.6G099100' => 'ppe', 'Prupe.6G099200' => 'ppe', 'Prupe.6G099300' => 'ppe', 'Prupe.6G099400' => 'ppe', 'Prupe.6G238300' => 'ppe', 'Prupe.7G241800' => 'ppe', 'Psat0s1587g0080' => 'psa', 'Psat0s4905g0040' => 'psa', 'Psat1g194480' => 'psa', 'Psat1g194520' => 'psa', 'Psat2g003680' => 'psa', 'Psat3g044000' => 'psa', 'Psat5g274280' => 'psa', 'Psat5g277720' => 'psa', 'Psat5g277760' => 'psa', 'Psat5g277800' => 'psa', 'Psat5g277840' => 'psa', 'Psat7g067880' => 'psa', 'Psat7g067920' => 'psa', 'Psat7g068120' => 'psa', 'Psat7g068160' => 'psa', 'Psat7g224400' => 'psa', 'Psat7g224480' => 'psa', 'PSO210G0335' => 'pso', 'PSO210G2720' => 'pso', 'PSO339G4503' => 'pso', 'PSO384G2772' => 'pso', 'PSO541G2730' => 'pso', 'PSO541G3273' => 'pso', 'PSO675G1579' => 'pso', 'PSO675G1991' => 'pso', 'QL01p022736' => 'qlo', 'QL01p022740' => 'qlo', 'QL01p022744' => 'qlo', 'QL01p022751' => 'qlo', 'QL01p022769' => 'qlo', 'QL01p022787' => 'qlo', 'QL01p022794' => 'qlo', 'QL01p022799' => 'qlo', 'QL01p022815' => 'qlo', 'QL01p022823' => 'qlo', 'QL01p022900' => 'qlo', 'QL05p058720' => 'qlo', 'QL06p028973' => 'qlo', 'QL07p044715' => 'qlo', 'QL07p044718' => 'qlo', 'QL08p029521' => 'qlo', 'QL08p040731' => 'qlo', 'RcHm_v2.0_Chr2g0088651' => 'rch', 'RcHm_v2.0_Chr2g0157201' => 'rch', 'RcHm_v2.0_Chr3g0469401' => 'rch', 'RcHm_v2.0_Chr5g0059731' => 'rch', 'Rhsim04G0043800' => 'rsi', 'Rhsim04G0043900' => 'rsi', 'Rhsim04G0044900' => 'rsi', 'Rhsim04G0045000' => 'rsi', 'Rhsim04G0045400' => 'rsi', 'Rhsim05G0057600' => 'rsi', 'Rhsim05G0182600' => 'rsi', 'Rhsim05G0182700' => 'rsi', 'Rhsim06G0135900' => 'rsi', 'Rhsim13G0093400' => 'rsi', 'Sabra04G0142100' => 'sbr', 'Sabra04G0142200' => 'sbr', 'Sabra06G0101700' => 'sbr', 'Sabra09G0008900' => 'sbr', 'Sabra12G0016800' => 'sbr', 'Sabra12G0016900' => 'sbr', 'Sabra12G0096000' => 'sbr', 'Sabra13G0012500' => 'sbr', 'Sabra13G0101900' => 'sbr', 'Sabra13G0121600' => 'sbr', 'Sabra13G0121800' => 'sbr', 'Sabra15G0010800' => 'sbr', 'Sabra15G0142700' => 'sbr', 'Sabra16G0094200' => 'sbr', 'Sabra16G0203300' => 'sbr', 'Sabra19G0106700' => 'sbr', 'Sabra19G0121200' => 'sbr', 'Sabra19G0121300' => 'sbr', 'Sabra19G0132800' => 'sbr', 'Sabra19G0132900' => 'sbr', 'SalBow3G3361' => 'sbo', 'SalBow3G3379' => 'sbo', 'SalBow5G0409' => 'sbo', 'SalBow5G1327' => 'sbo', 'SalBow5G1512' => 'sbo', 'SalBow5G4108' => 'sbo', 'SalBow5G4739' => 'sbo', 'SalBow5G4764' => 'sbo', 'SalBow7G0021' => 'sbo', 'Sc07g0004680' => 'sci', 'Sc20g0003840' => 'sci', 'Sc21g0003620' => 'sci', 'Sed0000360' => 'sed', 'Sed0008305' => 'sed', 'Sed0013210' => 'sed', 'Sed0015479' => 'sed', 'Sed0016229' => 'sed', 'Sed0023628' => 'sed', 'SEGI_04854' => 'sgi', 'SEGI_06010' => 'sgi', 'SEGI_06329' => 'sgi', 'SEGI_37396' => 'sgi', 'SGA_v2.0_scaffold159G37530' => 'sas', 'SGA_v2.0_scaffold452G51842' => 'sas', 'SGA_v2.0_scaffold61G21146' => 'sas', 'SGA_v2.0_scaffold61G21149' => 'sas', 'SGA_v2.0_scaffold70G23477' => 'sas', 'SGA_v2.0_scaffold75G24872' => 'sas', 'SGA_v2.0_scaffold80G25755' => 'sas', 'Solyc06g075220.1' => 'sly', 'Solyc07g048090.2' => 'sly', 'Solyc07g053530.1' => 'sly', 'Solyc07g053540.1' => 'sly', 'Solyc09g007650.3' => 'sly', 'Solyc09g007660.1' => 'sly', 'Solyc11g069250.2' => 'sly', 'Sopen06g031630' => 'spe', 'Sopen07g024510' => 'spe', 'Sopen07g027480' => 'spe', 'Sopen07g027490' => 'spe', 'Sopen09g002530' => 'spe', 'Sopen09g002540' => 'spe', 'Sopen11g027980' => 'spe', 'Sp1g02730' => 'spa', 'Sp2g08970' => 'spa', 'Sp3g23390' => 'spa', 'Sp3g33750' => 'spa', 'Sp6g22070' => 'spa', 'Sp6g39550' => 'spa', 'TAR369G0032' => 'tar', 'TAR369G0088' => 'tar', 'TAR369G0387' => 'tar', 'TAR369G0730' => 'tar', 'TAR369G0731' => 'tar', 'TAR369G0903' => 'tar', 'TAR369G0953' => 'tar', 'TAR623G1166' => 'tar', 'TAR624G0883' => 'tar', 'TAR624G1411' => 'tar', 'TAR626G0230' => 'tar', 'TAR627G1029' => 'tar', 'TAR633G1504' => 'tar', 'THA.LOC104799498' => 'tha', 'THA.LOC104801154' => 'tha', 'THA.LOC104808858' => 'tha', 'THA.LOC104810848' => 'tha', 'THA.LOC104814516' => 'tha', 'THA.LOC104815351' => 'tha', 'THA.LOC104826974' => 'tha', 'Thecc.01G186100' => 'tca', 'Thecc.02G188200' => 'tca', 'Thecc.05G057600' => 'tca', 'Thecc.09G257700' => 'tca', 'Thhalv10002226m.g' => 'esa', 'Thhalv10002647m.g' => 'esa', 'Thhalv10003262m.g' => 'esa', 'Thhalv10008582m.g' => 'esa', 'Thhalv10014491m.g' => 'esa', 'Thhalv10015384m.g' => 'esa', 'TPR.G11523' => 'tpr', 'TPR.G11538' => 'tpr', 'TPR.G11593' => 'tpr', 'TPR.G15071' => 'tpr', 'TPR.G15546' => 'tpr', 'TPR.G15548' => 'tpr', 'TPR.G15556' => 'tpr', 'TPR.G15564' => 'tpr', 'TPR.G18264' => 'tpr', 'TPR.G20424' => 'tpr', 'TPR.G3948' => 'tpr', 'TPR.G4497' => 'tpr', 'TPR.G4564' => 'tpr', 'TPR.G6444' => 'tpr', 'TPR.G6727' => 'tpr', 'TPR.G6795' => 'tpr', 'TPR.G6802' => 'tpr', 'TWI18G0839' => 'twi', 'TWI36G0120' => 'twi', 'TWI53G0055' => 'twi', 'TWI59G0321' => 'twi', 'TWI59G0831' => 'twi', 'TWI74G1210' => 'twi', 'TWI75G0689' => 'twi', 'TWI79G1548' => 'twi', 'unitig_746.g26669' => 'ugi', 'unitig_749.g14269' => 'ugi', 'unitig_899.g15321' => 'ugi', 'vmacro03186' => 'vma', 'VMungo0251G1884' => 'vmu', 'VMungo0540G0855' => 'vmu', 'VMungo0540G2407' => 'vmu', 'VMungo0647G1563' => 'vmu', 'VMungo1080G0100' => 'vmu', 'VMungo1080G0839' => 'vmu', 'VMungo1080G1009' => 'vmu', 'VMungo1127G0299' => 'vmu', 'VMungo1127G0425' => 'vmu', 'VMungo1127G0727' => 'vmu', 'VMungo1127G0832' => 'vmu', 'VMungo1127G0871' => 'vmu', 'VMungo1127G1550' => 'vmu', 'VMungo1127G1896' => 'vmu', 'VMungo1127G1899' => 'vmu', 'VMungo1127G1957' => 'vmu', 'VMungo1383G0324' => 'vmu', 'Zm00001eb101760' => 'zma', 'Zm00001eb157310' => 'zma', 'Zm00001eb199660' => 'zma', 'Zm00001eb203300' => 'zma', 'Zm00001eb316460' => 'zma', 'Zm00001eb343680' => 'zma', 'Zm00001eb353910' => 'zma', 'Zm00001eb424730' => 'zma' ) $gf_id = 'HOM05D000656' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000656' ) $data_identifier = 'HOM05D000656' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 13, 'cansat' => (int) 17, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 14, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 19, 'ccl' => (int) 6, 'cil' => (int) 22, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 16, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 42, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 14, 'hma' => (int) 2, 'vpl' => (int) 5, 'lal' => (int) 15, 'lonja' => (int) 6, 'lja' => (int) 14, 'lsa' => (int) 5, 'mes' => (int) 21, 'mbi' => (int) 7, 'mdo' => (int) 7, 'mtr' => (int) 17, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 27, 'ptr' => (int) 25, 'ppe' => (int) 9, 'psa' => (int) 17, 'pso' => (int) 8, 'qlo' => (int) 17, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 20, 'sbo' => (int) 9, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 1, 'vmu' => (int) 17, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424730' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1